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January 2021

Fluorescence microscopy image of HeLa cells infected with a Bartonella henselae strain deleted for all genes encoding the T4SS-translocated Bartonella effector proteins BepA-BepG in the chromosome that expresses BepC from a plasmid. Bacteria (red, visualized with an anti-B. henselae antibody) translocate BepC into the host cells, resulting in actin stress fiber formation (green, visualized by phalloidin staining). Nuclei were stained with DAPI (blue). Marlaire and Dehio.

Image Credit: Marlaire S and Dehio C. (2021)

Pearls

Quorum sensing across bacterial and viral domains

Olivia P. Duddy, Bonnie L. Bassler

Exploring amino acid and peptide transporters as therapeutic targets to attenuate virulence and antibiotic resistance in Staphylococcus aureus

Merve Suzan Zeden, Órla Burke, Moya Vallely, Claire Fingleton, James P. O’Gara

Short and sweet: How glycans impact prion conversion, cofactor interactions, and cross-species transmission

Patricia Aguilar-Calvo, Julia A. Callender, Christina J. Sigurdson

DUSP11 and triphosphate RNA balance during virus infection

Joon H. Choi, Christopher S. Sullivan

Mechanisms and therapeutic potential of collateral sensitivity to antibiotics

Roderich Roemhild, Dan I. Andersson

Reviews

Etiology of lactic acidosis in malaria

Hendrik Possemiers, Leen Vandermosten, Philippe E. Van den Steen

The genetic proteome: Using genetics to inform the proteome of mycobacterial pathogens

Kathleen R. Nicholson, C. Bruce Mousseau, Matthew M. Champion, Patricia A. Champion

The role of Neuropilin-1 in COVID-19

Bindu S. Mayi, Jillian A. Leibowitz, Arden T. Woods, Katherine A. Ammon, Alphonse E. Liu, Aarti Raja

Bacterial nucleomodulins: A coevolutionary adaptation to the eukaryotic command center

Hannah E. Hanford, Juanita Von Dwingelo, Yousef Abu Kwaik

Interferon regulatory factor 1 (IRF1) and anti-pathogen innate immune responses

Hui Feng, Yi-Bing Zhang, Jian-Fang Gui, Stanley M. Lemon, Daisuke Yamane

Research Articles

T-bet-dependent ILC1- and NK cell-derived IFN-γ mediates cDC1-dependent host resistance against Toxoplasma gondii

Américo H. López-Yglesias, Elise Burger, Ellie Camanzo, Andrew T. Martin, Alessandra M. Araujo, Samantha F. Kwok, Felix Yarovinsky

Intra-host changes in Kaposi sarcoma-associated herpesvirus genomes in Ugandan adults with Kaposi sarcoma

Jan Clement Santiago, Jason D. Goldman, Hong Zhao, Alec P. Pankow, Fred Okuku, Michael W. Schmitt, Lennie H. Chen, C. Alexander Hill, Corey Casper, Warren T. Phipps, James I. Mullins

Extensive proteomic and transcriptomic changes quench the TCR/CD3 activation signal of latently HIV-1 infected T cells

Eric Carlin, Braxton Greer, Kelsey Lowman, Alexandra Duverger, Frederic Wagner, David Moylan, Alexander Dalecki, Shekwonya Samuel, Mildred Perez, Steffanie Sabbaj, Olaf Kutsch

Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly

Pingzhi Zhao, Xuan Zhang, Yuqing Gong, Duan Wang, Dongqing Xu, Ning Wang, Yanwei Sun, Lianbo Gao, Shu-Sheng Liu, Xing Wang Deng, Daniel J. Kliebenstein, Xueping Zhou, Rong-Xiang Fang, Jian Ye

The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion

Stefan L. Oliver, Yi Xing, Dong-Hua Chen, Soung Hun Roh, Grigore D. Pintilie, David A. Bushnell, Marvin H. Sommer, Edward Yang, Andrea Carfi, Wah Chiu, Ann M. Arvin

Novel modulators of p53-signaling encoded by unknown genes of emerging viruses

Dina Alzhanova, Kathleen Corcoran, Aubrey G. Bailey, Kristin Long, Sharon Taft-Benz, Rachel L. Graham, Grant S. Broussard, Mark Heise, Gabriele Neumann, Peter Halfmann, Yoshihiro Kawaoka, Ralph S. Baric, Blossom Damania, Dirk P. Dittmer

Bartonella type IV secretion effector BepC induces stress fiber formation through activation of GEF-H1

Chunyan Wang, Haoran Zhang, Jiaqi Fu, Meng Wang, Yuhao Cai, Tianyun Ding, Jiezhang Jiang, Jane E. Koehler, Xiaoyun Liu, Congli Yuan

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T cells in the brain enhance neonatal mortality during peripheral LCMV infection

Laurie L. Kenney, Erik P. Carter, Anna Gil, Liisa K. Selin

Balancing of the mitotic exit network and cell wall integrity signaling governs the development and pathogenicity in Magnaporthe oryzae

Wanzhen Feng, Ziyi Yin, Haowen Wu, Peng Liu, Xinyu Liu, Muxing Liu, Rui Yu, Chuyun Gao, Haifeng Zhang, Xiaobo Zheng, Ping Wang, Zhengguang Zhang

Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus

Stephanie J. Child, Alexander L. Greninger, Adam P. Geballe

Pomalidomide restores immune recognition of primary effusion lymphoma through upregulation of ICAM-1 and B7-2

Prabha Shrestha, David A. Davis, Hannah K. Jaeger, Alexandra Stream, Ashley I. Aisabor, Robert Yarchoan

TRK-Fused Gene (TFG), a protein involved in protein secretion pathways, is an essential component of the antiviral innate immune response

Kashif Aziz Khan, Alexandre Marineau, Priscilla Doyon, Mariana Acevedo, Étienne Durette, Anne-Claude Gingras, Marc J. Servant

Emergency response for evaluating SARS-CoV-2 immune status, seroprevalence and convalescent plasma in Argentina

Diego S. Ojeda, María Mora Gonzalez Lopez Ledesma, Horacio M. Pallarés, Guadalupe S. Costa Navarro, Lautaro Sanchez, Beatriz Perazzi, Sergio M. Villordo, Diego E. Alvarez, BioBanco Working Group, Marcela Echavarria, Kasopefoluwa Y. Oguntuyo, Christian S. Stevens, Benhur Lee, Jorge Carradori, Julio J. Caramelo, Marcelo J. Yanovsky, Andrea V. Gamarnik

Carbomer-based adjuvant elicits CD8 T-cell immunity by inducing a distinct metabolic state in cross-presenting dendritic cells

Woojong Lee, Brock Kingstad-Bakke, Brett Paulson, Autumn Larsen, Katherine Overmyer, Chandranaik B. Marinaik, Kelly Dulli, Randall Toy, Gabriela Vogel, Katherine P. Mueller, Kelsey Tweed, Alex J. Walsh, Jason Russell, Krishanu Saha, Leticia Reyes, Melissa C. Skala, John-Demian Sauer, Dmitry M. Shayakhmetov, Joshua Coon, Krishnendu Roy, M. Suresh

Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response

Qi Wang, Nadia Shakoor, Adam Boyher, Kira M. Veley, Jeffrey C. Berry, Todd C. Mockler, Rebecca S. Bart

Kaposi’s sarcoma-associated herpesvirus latency-associated nuclear antigen dysregulates expression of MCL-1 by targeting FBW7

Yeong Jun Kim, Yuri Kim, Abhishek Kumar, Chan Woo Kim, Zsolt Toth, Nam Hyuk Cho, Hye-Ra Lee

A type VII secretion system of Streptococcus gallolyticus subsp. gallolyticus contributes to gut colonization and the development of colon tumors

John Culver Taylor, Xinsheng Gao, Juan Xu, Michael Holder, Joseph Petrosino, Ritesh Kumar, Wen Liu, Magnus Höök, Chris Mackenzie, Andrew Hillhouse, Wesley Brashear, Maria Patricia Nunez, Yi Xu

Orthopoxvirus K3 orthologs show virus- and host-specific inhibition of the antiviral protein kinase PKR

Chorong Park, Chen Peng, M. Julhasur Rahman, Sherry L. Haller, Loubna Tazi, Greg Brennan, Stefan Rothenburg

Immunological design of commensal communities to treat intestinal infection and inflammation

Rebecca L. Brown, Max L. Y. Larkinson, Thomas B. Clarke

A novel mode of control of nickel uptake by a multifunctional metallochaperone

Milica Denic, Evelyne Turlin, Valérie Michel, Frédéric Fischer, Mozhgan Khorasani-Motlagh, Deborah Zamble, Daniel Vinella, Hilde de Reuse

Bacterial dormancy: A subpopulation of viable but non-culturable cells demonstrates better fitness for revival

Sariqa Wagley, Helen Morcrette, Andrea Kovacs-Simon, Zheng R. Yang, Ann Power, Richard K. Tennant, John Love, Neil Murray, Richard W. Titball, Clive S. Butler

K18-hACE2 mice develop respiratory disease resembling severe COVID-19

Claude Kwe Yinda, Julia R. Port, Trenton Bushmaker, Irene Offei Owusu, Jyothi N. Purushotham, Victoria A. Avanzato, Robert J. Fischer, Jonathan E. Schulz, Myndi G. Holbrook, Madison J. Hebner, Rebecca Rosenke, Tina Thomas, Andrea Marzi, Sonja M. Best, Emmie de Wit, Carl Shaia, Neeltje van Doremalen, Vincent J. Munster

Functional analyses of epidemic Clostridioides difficile toxin B variants reveal their divergence in utilizing receptors and inducing pathology

Zhenrui Pan, Yuanyuan Zhang, Jianhua Luo, Danyang Li, Yao Zhou, Liuqing He, Qi Yang, Min Dong, Liang Tao

Metabolic reprogramming of the myeloid lineage by Schistosoma mansoni infection persists independently of antigen exposure

Diana Cortes-Selva, Lisa Gibbs, J. Alan Maschek, Marcia Nascimento, Tyler Van Ry, James E. Cox, Eyal Amiel, Keke C. Fairfax

In vivo nanoscale analysis of the dynamic synergistic interaction of Bacillus thuringiensis Cry11Aa and Cyt1Aa toxins in Aedes aegypti

Samira López-Molina, Nathaly Alexandre do Nascimento, Maria Helena Neves Lobo Silva-Filha, Adán Guerrero, Jorge Sánchez, Sabino Pacheco, Sarjeet S. Gill, Mario Soberón, Alejandra Bravo

A multi-omics approach to Epstein-Barr virus immortalization of B-cells reveals EBNA1 chromatin pioneering activities targeting nucleotide metabolism

R. Jason Lamontagne, Samantha S. Soldan, Chenhe Su, Andreas Wiedmer, Kyoung Jae Won, Fang Lu, Aaron R. Goldman, Jayamanna Wickramasinghe, Hsin-Yao Tang, David W. Speicher, Louise Showe, Andrew V. Kossenkov, Paul M. Lieberman

Enhanced biofilm and extracellular matrix production by chronic carriage versus acute isolates of Salmonella Typhi

Aishwarya Devaraj, Juan F. González, Bradley Eichar, Gatan Thilliez, Robert A. Kingsley, Stephen Baker, Marc W. Allard, Lauren O. Bakaletz, John S. Gunn, Steven D. Goodman

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Hydroxychloroquine-mediated inhibition of SARS-CoV-2 entry is attenuated by TMPRSS2

Tianling Ou, Huihui Mou, Lizhou Zhang, Amrita Ojha, Hyeryun Choe, Michael Farzan

Naturally occurring substitution in one amino acid in VHSV phosphoprotein enhances viral virulence in flounder

Jee Youn Hwang, Unn Hwa Lee, Min Jin Heo, Min Sun Kim, Ji Min Jeong, So Yeon Kim, Mun Gyeong Kwon, Bo Young Jee, Ki Hong Kim, Chan-Il Park, Jeong Woo Park

Relationship between CD4 T cell turnover, cellular differentiation and HIV persistence during ART

Charline Bacchus-Souffan, Mark Fitch, Jori Symons, Mohamed Abdel-Mohsen, Daniel B. Reeves, Rebecca Hoh, Mars Stone, Joseph Hiatt, Peggy Kim, Abha Chopra, Haelee Ahn, Vanessa A. York, Daniel L. Cameron, Frederick M. Hecht, Jeffrey N. Martin, Steven A. Yukl, Simon Mallal, Paul U. Cameron, Steven G. Deeks, Joshua T. Schiffer, Sharon R. Lewin, Marc K. Hellerstein, Joseph M. McCune, Peter W. Hunt

Injection site vaccinology of a recombinant vaccinia-based vector reveals diverse innate immune signatures

Jessamine E. Hazlewood, Troy Dumenil, Thuy T. Le, Andrii Slonchak, Stephen H. Kazakoff, Ann-Marie Patch, Lesley-Ann Gray, Paul M. Howley, Liang Liu, John D. Hayball, Kexin Yan, Daniel J. Rawle, Natalie A. Prow, Andreas Suhrbier

MEK/ERK signaling is a critical regulator of high-risk human papillomavirus oncogene expression revealing therapeutic targets for HPV-induced tumors

Adrian J. Luna, Rosa T. Sterk, Anastacia M. Griego-Fisher, Joon-Yong Chung, Kiersten L. Berggren, Virginie Bondu, Pamela Barraza-Flores, Andrew T. Cowan, Gregory N. Gan, Emrullah Yilmaz, Hanbyoul Cho, Jae-Hoon Kim, Stephen M. Hewitt, Julie E. Bauman, Michelle A. Ozbun

In vivo antagonistic role of the Human T-Cell Leukemia Virus Type 1 regulatory proteins Tax and HBZ

Abdou Akkouche, Sara Moodad, Rita Hleihel, Hala Skayneh, Séverine Chambeyron, Hiba El Hajj, Ali Bazarbachi

Activation of EphA2-EGFR signaling in oral epithelial cells by Candida albicans virulence factors

Marc Swidergall, Norma V. Solis, Nicolas Millet, Manning Y. Huang, Jianfeng Lin, Quynh T. Phan, Michael D. Lazarus, Zeping Wang, Michael R. Yeaman, Aaron P. Mitchell, Scott G. Filler

A novel sialic acid-binding adhesin present in multiple species contributes to the pathogenesis of Infective endocarditis

Meztlli O. Gaytán, Anirudh K. Singh, Shireen A. Woodiga, Surina A. Patel, Seon-Sook An, Arturo Vera-Ponce de León, Sean McGrath, Anthony R. Miller, Jocelyn M. Bush, Mark van der Linden, Vincent Magrini, Richard K. Wilson, Todd Kitten, Samantha J. King

Reliable, scalable functional genetics in bloodstream-form Trypanosoma congolense in vitro and in vivo

Georgina Awuah-Mensah, Jennifer McDonald, Pieter C. Steketee, Delphine Autheman, Sarah Whipple, Simon D'Archivio, Cordelia Brandt, Simon Clare, Katherine Harcourt, Gavin J. Wright, Liam J. Morrison, Catarina Gadelha, Bill Wickstead

The coronavirus proofreading exoribonuclease mediates extensive viral recombination

Jennifer Gribble, Laura J. Stevens, Maria L. Agostini, Jordan Anderson-Daniels, James D. Chappell, Xiaotao Lu, Andrea J. Pruijssers, Andrew L. Routh, Mark R. Denison

Outer membrane permeabilization by the membrane attack complex sensitizes Gram-negative bacteria to antimicrobial proteins in serum and phagocytes

Dani A. C. Heesterbeek, Remy M. Muts, Vincent P. van Hensbergen, Pieter de Saint Aulaire, Tom Wennekes, Bart W. Bardoel, Nina M. van Sorge, Suzan H. M. Rooijakkers

Phase separation and DAXX redistribution contribute to LANA nuclear body and KSHV genome dynamics during latency and reactivation

Olga Vladimirova, Alessandra De Leo, Zhong Deng, Andreas Wiedmer, James Hayden, Paul M. Lieberman

SARS-CoV-2 variants with mutations at the S1/S2 cleavage site are generated in vitro during propagation in TMPRSS2-deficient cells

Michihito Sasaki, Kentaro Uemura, Akihiko Sato, Shinsuke Toba, Takao Sanaki, Katsumi Maenaka, William W. Hall, Yasuko Orba, Hirofumi Sawa

An Alba-domain protein required for proteome remodelling during trypanosome differentiation and host transition

Shubha Bevkal, Arunasalam Naguleswaran, Ruth Rehmann, Marcel Kaiser, Manfred Heller, Isabel Roditi

Temporally integrated single cell RNA sequencing analysis of PBMC from experimental and natural primary human DENV-1 infections

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A host cell long noncoding RNA NR_033736 regulates type I interferon-mediated gene transcription and modulates intestinal epithelial anti-Cryptosporidium defense

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Furin cleavage of SARS-CoV-2 Spike promotes but is not essential for infection and cell-cell fusion

Guido Papa, Donna L. Mallery, Anna Albecka, Lawrence G. Welch, Jérôme Cattin-Ortolá, Jakub Luptak, David Paul, Harvey T. McMahon, Ian G. Goodfellow, Andrew Carter, Sean Munro, Leo C. James

High genetic variability of Schmallenberg virus M-segment leads to efficient immune escape from neutralizing antibodies

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The NF-κB regulator Bcl-3 restricts terminal differentiation and promotes memory cell formation of CD8+ T cells during viral infection

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Human FcRn expression and Type I Interferon signaling control Echovirus 11 pathogenesis in mice

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Hematopoietic cell-mediated dissemination of murine cytomegalovirus is regulated by NK cells and immune evasion

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Nucleosome landscape reflects phenotypic differences in Trypanosoma cruzi life forms

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Ebola virus triggers receptor tyrosine kinase-dependent signaling to promote the delivery of viral particles to entry-conducive intracellular compartments

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