Genomic epidemiology of Plasmodium knowlesi reveals putative genetic drivers of adaptation in Malaysia

• Jacob A. F. Westaway ,

  Roles Conceptualization, Data curation, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: Jacob.westaway@menzies.edu.au

  Affiliations Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia, Centre for Tropical Bioinformatics and Molecular Biology, James Cook University, Cairns, Queensland, Australia

  https://orcid.org/0000-0002-5171-819X

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• Ernest Diez Benavente,

  Roles Conceptualization, Formal analysis, Software, Supervision, Visualization, Writing – review & editing

  Affiliation Laboratory of Experimental Cardiology, University Medical Center Utrecht, Utrecht, the Netherlands

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• Sarah Auburn,

  Roles Conceptualization, Formal analysis, Methodology, Project administration, Software, Supervision, Visualization, Writing – review & editing

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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• Michal Kucharski,

  Roles Investigation, Writing – review & editing

  Affiliation Nanyang Technological University, SingaporeSingapore

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• Nicolas Aranciaga,

  Roles Investigation, Writing – review & editing

  Affiliation Nanyang Technological University, SingaporeSingapore

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• Sourav Nayak,

  Roles Data curation, Investigation

  Affiliation Nanyang Technological University, SingaporeSingapore

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• Timothy William,

  Roles Funding acquisition, Resources

  Affiliation Infectious Disease Society Kota Kinabalu, Kota Kinabalu, Sabah, Malaysia

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• Giri S. Rajahram,

  Roles Funding acquisition, Resources

  Affiliations Infectious Disease Society Kota Kinabalu, Kota Kinabalu, Sabah, Malaysia, Queen Elizabeth II Hospital-Clinical Research Centre, Ministry of Health, Kota Kinabalu, Sabah, Malaysia

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• Kim A. Piera,

  Roles Investigation

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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• Kamil Braima,

  Roles Investigation, Writing – review & editing

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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• Angelica F. Tan,

  Roles Investigation

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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• Danshy A. Alaza,

  Roles Data curation

  Affiliation Infectious Disease Society Kota Kinabalu, Kota Kinabalu, Sabah, Malaysia

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• Bridget E. Barber,

  Roles Funding acquisition, Resources

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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• Chris Drakeley,

  Roles Funding acquisition, Writing – review & editing

  Affiliation London School of Hygiene & Tropical Medicine, London, United Kingdom

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• Roberto Amato,

  Roles Conceptualization, Methodology

  Affiliation Wellcome Sanger Institute, Hinxton, United Kingdom

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• Edwin Sutanto,

  Roles Formal analysis, Software, Visualization, Writing – review & editing

  Affiliation Exeins Health Initiative, Jakarta, Indonesia

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• Hidayat Trimarsanto,

  Roles Formal analysis, Software, Visualization, Writing – review & editing

  Affiliations Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia, Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, Jakarta, Indonesia

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• Jenarun Jelip,

  Roles Resources, Writing – review & editing

  Affiliation Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia

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• Nicholas M. Anstey,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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• Zbynek Bozdech,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Writing – review & editing

  Affiliation Nanyang Technological University, SingaporeSingapore

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• Matthew Field ,

  Contributed equally to this work with: Matthew Field, Matthew J. Grigg

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – review & editing

  Affiliations Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia, Centre for Tropical Bioinformatics and Molecular Biology, James Cook University, Cairns, Queensland, Australia, College of Public Health, Medical and Veterinary Science, James Cook University, Townsville, Queensland, Australia, Immunogenomics Lab, Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia

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•  [ ... ],
• Matthew J. Grigg

  Contributed equally to this work with: Matthew Field, Matthew J. Grigg

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Supervision, Visualization, Writing – review & editing

  Affiliation Global and Tropical Health, Menzies School of Health Research and Charles Darwin University, Darwin, Northern Territory, Australia

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