Domestic animal genetics

Tosso Leeb

PLOS Genetics: published October 18, 2021 | https://doi.org/10.1371/journal.pgen.1009831

Patterning with clocks and genetic cascades: Segmentation and regionalization of vertebrate versus insect body plans

Margarete Diaz-Cuadros, Olivier Pourquié, Ezzat El-Sherif

PLOS Genetics: published October 14, 2021 | https://doi.org/10.1371/journal.pgen.1009812

Haplotype associated RNA expression (HARE) improves prediction of complex traits in maize

Anju Giri, Merritt Khaipho-Burch, Edward S. Buckler, Guillaume P. Ramstein

PLOS Genetics: published October 4, 2021 | https://doi.org/10.1371/journal.pgen.1009568

Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation

Silke Fuchs, William T. Garrood, Anna Beber, Andrew Hammond, Roberto Galizi, Matthew Gribble, Giulia Morselli, Tin-Yu J. Hui, Katie Willis, Nace Kranjc, Austin Burt, Andrea Crisanti, Tony Nolan

PLOS Genetics: published October 5, 2021 | https://doi.org/10.1371/journal.pgen.1009740

A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiation

Pengjie Hu, Hao Ding, Lan Shen, Guang-Jun He, Huimin Liu, Xiuyun Tian, Changyu Tao, Xiangzheng Bai, Jingnan Liang, Cheng Jin, Xinping Xu, Ence Yang, Linqi Wang

PLOS Genetics: published October 8, 2021 | https://doi.org/10.1371/journal.pgen.1009817

A novel AST2 mutation generated upon whole-genome transformation of Saccharomyces cerevisiae confers high tolerance to 5-Hydroxymethylfurfural (HMF) and other inhibitors

Gert Vanmarcke, Quinten Deparis, Ward Vanthienen, Arne Peetermans, Maria R. Foulquié-Moreno, Johan M. Thevelein

PLOS Genetics: published October 8, 2021 | https://doi.org/10.1371/journal.pgen.1009826

Selective sorting of ancestral introgression in maize and teosinte along an elevational cline

Erin Calfee, Daniel Gates, Anne Lorant, M. Taylor Perkins, Graham Coop, Jeffrey Ross-Ibarra

PLOS Genetics: published October 11, 2021 | https://doi.org/10.1371/journal.pgen.1009810

Pathogenic BCL11A variants provide insights into the mechanisms of human fetal hemoglobin silencing

Yong Shen, Rick Li, Kristian Teichert, Kara E. Montbleau, Jeffrey M. Verboon, Richard A. Voit, Vijay G. Sankaran

PLOS Genetics: published October 11, 2021 | https://doi.org/10.1371/journal.pgen.1009835

BMP pathway regulation of insulin signaling components promotes lipid storage in Caenorhabditis elegans

James F. Clark, Emma J. Ciccarelli, Peter Kayastha, Gehan Ranepura, Katerina K. Yamamoto, Muhammad S. Hasan, Uday Madaan, Alicia Meléndez, Cathy Savage-Dunn

PLOS Genetics: published October 11, 2021 | https://doi.org/10.1371/journal.pgen.1009836

Metabolic gene regulation by Drosophila GATA transcription factor Grain

Krista Kokki, Nicole Lamichane, Anni I. Nieminen, Hanna Ruhanen, Jack Morikka, Marius Robciuc, Bohdana M. Rovenko, Essi Havula, Reijo Käkelä, Ville Hietakangas

PLOS Genetics: published October 11, 2021 | https://doi.org/10.1371/journal.pgen.1009855

dRTEL1 is essential for the maintenance of Drosophila male germline stem cells

Ying Yang, Ruiyan Kong, Feng Guang Goh, W. Gregory Somers, Gary R. Hime, Zhouhua Li, Yu Cai

PLOS Genetics: published October 13, 2021 | https://doi.org/10.1371/journal.pgen.1009834

The genomic ecosystem of transposable elements in maize

Michelle C. Stitzer, Sarah N. Anderson, Nathan M. Springer, Jeffrey Ross-Ibarra

PLOS Genetics: published October 14, 2021 | https://doi.org/10.1371/journal.pgen.1009768

Machine learning to predict the source of campylobacteriosis using whole genome data

Nicolas Arning, Samuel K. Sheppard, Sion Bayliss, David A. Clifton, Daniel J. Wilson

PLOS Genetics: published October 18, 2021 | https://doi.org/10.1371/journal.pgen.1009436

Conditional knockdown of transformer in sheep blow fly suggests a role in repression of dosage compensation and potential for population suppression

Megan E. Williamson, Ying Yan, Maxwell J. Scott

PLOS Genetics: published October 18, 2021 | https://doi.org/10.1371/journal.pgen.1009792

Deciphering the genetic architecture and ethnographic distribution of IRD in three ethnic populations by whole genome sequence analysis

Pooja Biswas, Adda L. Villanueva, Angel Soto-Hermida, Jacque L. Duncan, Hiroko Matsui, Shyamanga Borooah, Berzhan Kurmanov, Gabriele Richard, Shahid Y. Khan, Kari Branham, Bonnie Huang, John Suk, Benjamin Bakall, Jeffrey L. Goldberg, Luis Gabriel, Naheed W. Khan, Pongali B. Raghavendra, Jason Zhou, Sindhu Devalaraja, Andrew Huynh, Akhila Alapati, Qais Zawaydeh, Richard G. Weleber, John R. Heckenlively, J. Fielding Hejtmancik, Sheikh Riazuddin, Paul A. Sieving, S. Amer Riazuddin, Kelly A. Frazer, Radha Ayyagari

PLOS Genetics: published October 18, 2021 | https://doi.org/10.1371/journal.pgen.1009848

Decreasing mitochondrial RNA polymerase activity reverses biased inheritance of hypersuppressive mtDNA

Daniel Corbi, Angelika Amon

PLOS Genetics: published October 19, 2021 | https://doi.org/10.1371/journal.pgen.1009808

Translational repression of NMD targets by GIGYF2 and EIF4E2

Boris Zinshteyn, Niladri K. Sinha, Syed Usman Enam, Benjamin Koleske, Rachel Green

PLOS Genetics: published October 19, 2021 | https://doi.org/10.1371/journal.pgen.1009813

Deficiency in cytosine DNA methylation leads to high chaperonin expression and tolerance to aminoglycosides in Vibrio cholerae

André Carvalho, Didier Mazel, Zeynep Baharoglu

PLOS Genetics: published October 20, 2021 | https://doi.org/10.1371/journal.pgen.1009748

Leveraging auxiliary data from arbitrary distributions to boost GWAS discovery with Flexible cFDR

Anna Hutchinson, Guillermo Reales, Thomas Willis, Chris Wallace

PLOS Genetics: published October 20, 2021 | https://doi.org/10.1371/journal.pgen.1009853

Bivalent individualization during chromosome territory formation in Drosophila spermatocytes by controlled condensin II protein activity and additional force generators

Luisa Vernizzi, Christian F. Lehner

PLOS Genetics: published October 20, 2021 | https://doi.org/10.1371/journal.pgen.1009870

Minimalistic mycoplasmas harbor different functional toxin-antitoxin systems

Virginia Hill, Hatice Akarsu, Rubén Sánchez Barbarroja, Valentina L. Cippà, Peter Kuhnert, Martin Heller, Laurent Falquet, Manfred Heller, Michael H. Stoffel, Fabien Labroussaa, Joerg Jores

PLOS Genetics: published October 21, 2021 | https://doi.org/10.1371/journal.pgen.1009365

AKAP13 couples GPCR signaling to mTORC1 inhibition

Shihai Zhang, Huanyu Wang, Chase H. Melick, Mi-Hyeon Jeong, Adna Curukovic, Shweta Tiwary, Tshering D. Lama-Sherpa, Delong Meng, Kelly A. Servage, Nicholas G. James, Jenna L. Jewell

PLOS Genetics: published October 21, 2021 | https://doi.org/10.1371/journal.pgen.1009832

Caenorhabditis elegans LET-413 Scribble is essential in the epidermis for growth, viability, and directional outgrowth of epithelial seam cells

Amalia Riga, Janine Cravo, Ruben Schmidt, Helena R. Pires, Victoria G. Castiglioni, Sander van den Heuvel, Mike Boxem

PLOS Genetics: published October 21, 2021 | https://doi.org/10.1371/journal.pgen.1009856

Restarted replication forks are error-prone and cause CAG repeat expansions and contractions

Michaela A. Gold, Jenna M. Whalen, Karine Freon, Zixin Hong, Ismail Iraqui, Sarah A. E. Lambert, Catherine H. Freudenreich

PLOS Genetics: published October 21, 2021 | https://doi.org/10.1371/journal.pgen.1009863

Genome-wide analyses of light-regulated genes in Aspergillus nidulans reveal a complex interplay between different photoreceptors and novel photoreceptor functions

Zhenzhong Yu, Christian Streng, Ramon F. Seibeld, Olumuyiwa A. Igbalajobi, Kai Leister, Julian Ingelfinger, Reinhard Fischer

PLOS Genetics: published October 22, 2021 | https://doi.org/10.1371/journal.pgen.1009845

The SUMO ligase MMS21 profoundly influences maize development through its impact on genome activity and stability

Junya Zhang, Robert C. Augustine, Masaharu Suzuki, Juanjuan Feng, Si Nian Char, Bing Yang, Donald R. McCarty, Richard D. Vierstra

PLOS Genetics: published October 25, 2021 | https://doi.org/10.1371/journal.pgen.1009830

Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci

Hannah J. Perrin, Kevin W. Currin, Swarooparani Vadlamudi, Gautam K. Pandey, Kenneth K. Ng, Martin Wabitsch, Markku Laakso, Michael I. Love, Karen L. Mohlke

PLOS Genetics: published October 26, 2021 | https://doi.org/10.1371/journal.pgen.1009865

Cep55 regulation of PI3K/Akt signaling is required for neocortical development and ciliogenesis

Behnam Rashidieh, Belal Shohayeb, Amanda Louise Bain, Patrick R. J. Fortuna, Debottam Sinha, Andrew Burgess, Richard Mills, Rachael C. Adams, J. Alejandro Lopez, Peter Blumbergs, John Finnie, Murugan Kalimutho, Michael Piper, James Edward Hudson, Dominic C. H. Ng, Kum Kum Khanna

PLOS Genetics: published October 28, 2021 | https://doi.org/10.1371/journal.pgen.1009334

Porcine ZBED6 regulates growth of skeletal muscle and internal organs via multiple targets

Dandan Wang, Dengke Pan, Baocai Xie, Shengnan Wang, Xiangyang Xing, Xuexue Liu, Yuehui Ma, Leif Andersson, Jiangwei Wu, Lin Jiang

PLOS Genetics: published October 28, 2021 | https://doi.org/10.1371/journal.pgen.1009862

sRNA-mediated regulation of gal mRNA in E. coli: Involvement of transcript cleavage by RNase E together with Rho-dependent transcription termination

Heung Jin Jeon, Yonho Lee, Monford Paul Abishek N, Xun Wang, Dhruba K. Chattoraj, Heon M. Lim

PLOS Genetics: published October 28, 2021 | https://doi.org/10.1371/journal.pgen.1009878

Regulation of GSTu1-mediated insecticide resistance in Plutella xylostella by miRNA and lncRNA

Bin Zhu, Linhong Li, Rui Wei, Pei Liang, Xiwu Gao

PLOS Genetics: published October 28, 2021 | https://doi.org/10.1371/journal.pgen.1009888

Drosophila fabp is required for light-dependent Rhodopsin-1 clearance and photoreceptor survival

Huai-Wei Huang, Hyung Don Ryoo

PLOS Genetics: published October 29, 2021 | https://doi.org/10.1371/journal.pgen.1009551

Metabolic flux from the Krebs cycle to glutamate transmission tunes a neural brake on seizure onset

Jiwon Jeong, Jongbin Lee, Ji-hyung Kim, Chunghun Lim

PLOS Genetics: published October 29, 2021 | https://doi.org/10.1371/journal.pgen.1009871

Correction: Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images

Hannah Currant, Pirro Hysi, Tomas W. Fitzgerald, Puya Gharahkhani, Pieter W. M. Bonnemaijer, Anne Senabouth, Alex W. Hewitt, UK Biobank Eye and Vision Consortium, International Glaucoma Genetics Consortium, Denize Atan, Tin Aung, Jason Charng, Hélène Choquet, Jamie Craig, Peng T. Khaw, Caroline C. W. Klaver, Michiaki Kubo, Jue-Sheng Ong, Louis R. Pasquale, Charles A. Reisman, Maciej Daniszewski, Joseph E. Powell, Alice Pébay, Mark J. Simcoe, Alberta A. H. J. Thiadens, Cornelia M. van Duijn, Seyhan Yazar, Eric Jorgenson, Stuart MacGregor, Chris J. Hammond, David A. Mackey, Janey L. Wiggs, Paul J. Foster, Praveen J. Patel, Ewan Birney, Anthony P. Khawaja

PLOS Genetics: published October 18, 2021 | https://doi.org/10.1371/journal.pgen.1009858

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1. Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images