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August 2020

DIC (differential interference contrast) microscopy showing the radial growth of Aspergillus nidulans branches during initial stages of development on the surface of the medium. Image edited using Adobe Photoshop. The filamentous fungus A. nidulans needs to coordinate complex regulatory networks and the cross-talk between these pathways to appropriately sense and respond to environmental cues, such as carbon source availability. Subsequently, intracellular signalling events are activated which are coordinated by different protein kinase pathways to regulate carbon source metabolism. Carbon catabolite repression ensures utilisation of the energetically most favourable carbon source glucose whilst repressing the utilisation of alternative carbon sources. See de Assis et al.

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Image Credit: Leandro José de Assis

Editorial

Genomic imprinting: An epigenetic regulatory system

Marisa S. Bartolomei, Rebecca J. Oakey, Anton Wutz

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Reviews

The roles of replication-transcription conflict in mutagenesis and evolution of genome organization

Jeremy W. Schroeder, T. Sabari Sankar, Jue D. Wang, Lyle A. Simmons

Research Articles

A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals

Tiit Örd, Tarmo Puurand, Daima Örd, Tarmo Annilo, Märt Möls, Maido Remm, Tõnis Örd

Leveraging a gain-of-function allele of Caenorhabditis elegans paqr-1 to elucidate membrane homeostasis by PAQR proteins

Kiran Busayavalasa, Mario Ruiz, Ranjan Devkota, Marcus Ståhlman, Rakesh Bodhicharla, Emma Svensk, Nils-Olov Hermansson, Jan Borén, Marc Pilon

Haspin kinase modulates nuclear architecture and Polycomb-dependent gene silencing

Ujué Fresán, Maria A. Rodríguez-Sánchez, Oscar Reina, Victor G. Corces, M. Lluisa Espinàs

A point mutation decouples the lipid transfer activities of microsomal triglyceride transfer protein

Meredith H. Wilson, Sujith Rajan, Aidan Danoff, Richard J. White, Monica R. Hensley, Vanessa H. Quinlivan, Rosario Recacha, James H. Thierer, Frederick J. Tan, Elisabeth M. Busch-Nentwich, Lloyd Ruddock, M. Mahmood Hussain, Steven A. Farber

Drosophila miR-87 promotes dendrite regeneration by targeting the transcriptional repressor Tramtrack69

Yasuko Kitatani, Akane Tezuka, Eri Hasegawa, Satoyoshi Yanagi, Kazuya Togashi, Masato Tsuji, Shu Kondo, Jay Z. Parrish, Kazuo Emoto

Mutation of CFAP57, a protein required for the asymmetric targeting of a subset of inner dynein arms in Chlamydomonas, causes primary ciliary dyskinesia

Ximena M. Bustamante-Marin, Amjad Horani, Mihaela Stoyanova, Wu-Lin Charng, Mathieu Bottier, Patrick R. Sears, Wei-Ning Yin, Leigh Anne Daniels, Hailey Bowen, Donald F. Conrad, Michael R. Knowles, Lawrence E. Ostrowski, Maimoona A. Zariwala, Susan K. Dutcher

THOC1 deficiency leads to late-onset nonsyndromic hearing loss through p53-mediated hair cell apoptosis

Luping Zhang, Yu Gao, Ru Zhang, Feifei Sun, Cheng Cheng, Fuping Qian, Xuchu Duan, Guanyun Wei, Cheng Sun, Xiuhong Pang, Penghui Chen, Renjie Chai, Tao Yang, Hao Wu, Dong Liu

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Melody Cools, Simon Lissoir, Elisabeth Bodo, Judith Ulloa-Calzonzin, Alexander DeLuna, Isabelle Georis, Bruno André

Gα/GSA-1 works upstream of PKA/KIN-1 to regulate calcium signaling and contractility in the Caenorhabditis elegans spermatheca

Perla G. Castaneda, Alyssa D. Cecchetelli, Hannah N. Pettit, Erin J. Cram

Disruption of the ERLIN–TM6SF2–APOB complex destabilizes APOB and contributes to non-alcoholic fatty liver disease

Bo-Tao Li, Ming Sun, Yun-Feng Li, Ju-Qiong Wang, Zi-Mu Zhou, Bao-Liang Song, Jie Luo

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Xiaoxi Liu, Shunichi Kosugi, Rie Koide, Yoshiki Kawamura, Jumpei Ito, Hiroki Miura, Nana Matoba, Motomichi Matsuzaki, Masashi Fujita, Anselmo Jiro Kamada, Hidewaki Nakagawa, Gen Tamiya, Koichi Matsuda, Yoshinori Murakami, Michiaki Kubo, Amr Aswad, Kei Sato, Yukihide Momozawa, Jun Ohashi, Chikashi Terao, Tetsushi Yoshikawa, Nicholas F. Parrish, Yoichiro Kamatani

Mushroom body subsets encode CREB2-dependent water-reward long-term memory in Drosophila

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Cfap97d1 is important for flagellar axoneme maintenance and male mouse fertility

Seiya Oura, Samina Kazi, Audrey Savolainen, Kaori Nozawa, Julio Castañeda, Zhifeng Yu, Haruhiko Miyata, Ryan M. Matzuk, Jan N. Hansen, Dagmar Wachten, Martin M. Matzuk, Renata Prunskaite-Hyyryläinen

A subset of broadly responsive Type III taste cells contribute to the detection of bitter, sweet and umami stimuli

Debarghya Dutta Banik, Eric D. Benfey, Laura E. Martin, Kristen E. Kay, Gregory C. Loney, Amy R. Nelson, Zachary C. Ahart, Barrett T. Kemp, Bailey R. Kemp, Ann-Marie Torregrossa, Kathryn F. Medler

Transcriptional regulators of the Golli/myelin basic protein locus integrate additive and stealth activities

Hooman Bagheri, Hana Friedman, Katherine A. Siminovitch, Alan C. Peterson

Cryptic genetic variation enhances primate L1 retrotransposon survival by enlarging the functional coiled coil sequence space of ORF1p

Anthony V. Furano, Charlie E. Jones, Vipul Periwal, Kathryn E. Callahan, Jean-Claude Walser, Pamela R. Cook

Quorum sensing sets the stage for the establishment and vertical transmission of Sodalis praecaptivus in tsetse flies

Miguel Medina Munoz, Noah Spencer, Shinichiro Enomoto, Colin Dale, Rita V. M. Rio

On the cross-population generalizability of gene expression prediction models

Kevin L. Keys, Angel C. Y. Mak, Marquitta J. White, Walter L. Eckalbar, Andrew W. Dahl, Joel Mefford, Anna V. Mikhaylova, María G. Contreras, Jennifer R. Elhawary, Celeste Eng, Donglei Hu, Scott Huntsman, Sam S. Oh, Sandra Salazar, Michael A. Lenoir, Jimmie C. Ye, Timothy A. Thornton, Noah Zaitlen, Esteban G. Burchard, Christopher R. Gignoux

Epistatic interactions between killer immunoglobulin-like receptors and human leukocyte antigen ligands are associated with ankylosing spondylitis

Aimee L. Hanson, International Genetics of Ankylosing Spondylitis Consortium, Damjan Vukcevic, Stephen Leslie, Jessica Harris, Kim-Anh Lê Cao, Tony J. Kenna, Matthew A. Brown

Phospho-regulation of the Shugoshin - Condensin interaction at the centromere in budding yeast

Galal Yahya, Yehui Wu, Karolina Peplowska, Jennifer Röhrl, Young-Min Soh, Frank Bürmann, Stephan Gruber, Zuzana Storchova

Drosophila Myc restores immune homeostasis of Imd pathway via activating miR-277 to inhibit imd/Tab2

Ruimin Li, Hongjian Zhou, Chaolong Jia, Ping Jin, Fei Ma

Paired Box 9 (PAX9), the RNA polymerase II transcription factor, regulates human ribosome biogenesis and craniofacial development

Katherine I. Farley-Barnes, Engin Deniz, Maya M. Overton, Mustafa K. Khokha, Susan J. Baserga

A general framework for functionally informed set-based analysis: Application to a large-scale colorectal cancer study

Xinyuan Dong, Yu-Ru Su, Richard Barfield, Stephanie A. Bien, Qianchuan He, Tabitha A. Harrison, Jeroen R. Huyghe, Temitope O. Keku, Noralane M. Lindor, Clemens Schafmayer, Andrew T. Chan, Stephen B. Gruber, Mark A. Jenkins, Charles Kooperberg, Ulrike Peters, Li Hsu

The High Osmolarity Glycerol Mitogen-Activated Protein Kinase regulates glucose catabolite repression in filamentous fungi

Leandro José de Assis, Lilian Pereira Silva, Li Liu, Kerstin Schmitt, Oliver Valerius, Gerhard H. Braus, Laure Nicolas Annick Ries, Gustavo Henrique Goldman

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes

Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig

Distinct and sequential re-replication barriers ensure precise genome duplication

Yizhuo Zhou, Pedro N. Pozo, Seeun Oh, Haley M. Stone, Jeanette Gowen Cook

Uptake of exogenous serine is important to maintain sphingolipid homeostasis in Saccharomyces cerevisiae

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Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

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Opinion Piece

Costly Genes

Maria Karayiorgou