About the Authors

Andrea J. Radtke

Roles Conceptualization, Data curation, Investigation, Methodology, Project administration, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

andrea.radtke@leica-microsystems.com (AJR); rgermain@niaid.nih.gov (RNG); zivyaniv@nih.gov (ZY)

Current address: Leica Microsystems, Wetzlar, Germany

Affiliation Lymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Ifeanyichukwu U. Anidi

Roles Data curation, Resources, Writing – review & editing

Affiliation Critical Care Medicine and Pulmonary Branch, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Leanne Arakkal

Roles Data curation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Armando J. Arroyo-Mejias

Roles Data curation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Rebecca T. Beuschel

Roles Data curation

Current address: Division of Rheumatology, Inflammation, and Immunity, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Katy Börner

Roles Project administration, Supervision, Writing – review & editing

Affiliation Department of Intelligent Systems Engineering, Indiana University, Bloomington, Indiana, United States of America

Colin J. Chu

Roles Data curation, Funding acquisition, Resources, Writing – review & editing

Affiliation UCL Institute of Ophthalmology and NIHR Moorfields Biomedical Research Centre, London, United Kingdom

Beatrice Clark

Roles Data curation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Menna R. Clatworthy

Roles Data curation, Project administration

Affiliation Molecular Immunity Unit, Laboratory of Molecular Biology, Cambridge Institute for Therapeutic Immunology and Infectious Diseases, University of Cambridge Department of Medicine, Cambridge, United Kingdom

Jake Colautti

Roles Data curation

Affiliation Department of Medicine, McMaster Immunology Research Centre, Schroeder Allergy and Immunology Research Institute, Faculty of Health Sciences, McMaster University, Hamilton, Canada

Fabian Coscia

Affiliation Max-Delbrueck-Center for Molecular Medicine in the Helmholtz Association (MDC), Spatial Proteomics Group, Berlin, Germany

Joshua Croteau

Roles Data curation, Resources

Affiliation Department of Business Development, BioLegend Inc., San Diego, California, United States of America

Saven Denha

Roles Data curation

Affiliation Department of Medicine, McMaster Immunology Research Centre, Schroeder Allergy and Immunology Research Institute, Faculty of Health Sciences, McMaster University, Hamilton, Canada

Rose Dever

Roles Data curation

Affiliation Functional Immunogenomics Unit, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Walderez O. Dutra

Roles Data curation

Affiliation Laboratory of Cell-Cell Interactions, Department of Morphology, Institute of Biological Sciences, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

Sonja Fritzsche

Roles Data curation

Affiliation Max-Delbrueck-Center for Molecular Medicine in the Helmholtz Association (MDC), Spatial Proteomics Group, Berlin, Germany

Spencer Fullam

Roles Data curation

Affiliation Division of Rheumatology, Rush University Medical Center, Chicago, Illinois, United States of America

Michael Y. Gerner

Roles Data curation, Methodology, Resources

Affiliation Department of Immunology, University of Washington School of Medicine, Seattle, Washington, United States of America

Anita Gola

Roles Data curation, Methodology, Resources

Affiliation Robin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, New York, United States of America

Kenneth J. Gollob

Roles Data curation, Funding acquisition

Affiliation Center for Research in Immuno-oncology (CRIO), Hospital Israelita Albert Einstein, São Paulo, Brazil

Jonathan M. Hernandez

Roles Data curation, Funding acquisition, Resources

Affiliation Surgical Oncology Program, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Jyh Liang Hor

Roles Data curation, Methodology

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Hiroshi Ichise

Roles Data curation, Methodology

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Zhixin Jing

Roles Data curation, Resources

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Danny Jonigk

Roles Data curation, Project administration

Affiliations Institute of Pathology, Aachen Medical University, RWTH Aachen, Aachen, Germany, German Center for Lung Research (DZL), Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), Hannover, Germany

Evelyn Kandov

Roles Data curation, Methodology

Current address: Department of Pharmacology, Vanderbilt Brain Institute, Vanderbilt Center for Addiction Research, Vanderbilt University, Nashville, Tennessee, United States of America

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Wolfgang Kastenmüller

Roles Project administration, Supervision

Affiliation Würzburg Institute of Systems Immunology, Max Planck Research Group at the Julius-Maximilians-Universität Würzburg, Würzburg, Germany

Joshua F. E. Koenig

Roles Data curation, Resources, Validation

Affiliation Department of Medicine, McMaster Immunology Research Centre, Schroeder Allergy and Immunology Research Institute, Faculty of Health Sciences, McMaster University, Hamilton, Canada

Rosa K. Kortekaas

Affiliation Department of Medicine, McMaster University, Firestone Institute for Respiratory Health, St Joseph’s Healthcare, Hamilton, Canada

Aanandita Kothurkar

Roles Data curation, Validation

Affiliation UCL Institute of Ophthalmology and NIHR Moorfields Biomedical Research Centre, London, United Kingdom

Alexandra Y. Kreins

Roles Project administration, Supervision

Affiliations Infection Immunity and Inflammation Research and Teaching Department, University College London Great Ormond Street Institute of Child Health, London, United Kingdom, Department of Immunology and Gene Therapy, Great Ormond Street Hospital for Children NHS Foundation Trust, London, United Kingdom

Ian T. Lamborn

Roles Data curation, Validation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Yuri Lin

Roles Data curation, Validation

Affiliation Surgical Oncology Program, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Katia Luciano Pereira Morais

Roles Data curation, Validation

Affiliation Center for Research in Immuno-oncology (CRIO), Hospital Israelita Albert Einstein, São Paulo, Brazil

Aleksandra Lunich

Roles Data curation, Validation

Affiliation Critical Care Medicine and Pulmonary Branch, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Jean C. S. Luz

Roles Data curation, Validation

Affiliation Viral Vector Laboratory, Cancer Institute of São Paulo, University of São Paulo, São Paulo, Brazil

Ryan B. MacDonald

Roles Data curation, Supervision

Affiliation UCL Institute of Ophthalmology and NIHR Moorfields Biomedical Research Centre, London, United Kingdom

Chen Makranz

Roles Data curation, Validation

Affiliation Neuro-Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Vivien I. Maltez

Roles Data curation, Validation

Affiliation Division of Allergy, Immunology and Rheumatology, Department of Pediatrics, University of California San Diego, La Jolla, California, United States of America

John E. McDonough

Affiliation Department of Medicine, McMaster University, Firestone Institute for Respiratory Health, St Joseph’s Healthcare, Hamilton, Canada

Ryan V. Moriarty

Roles Data curation, Methodology

Affiliation Department of Cellular and Developmental Biology, Northwestern University, Chicago, Illinois, United States of America

Juan M. Ocampo-Godinez

Roles Data curation, Validation

Affiliations Infection Immunity and Inflammation Research and Teaching Department, University College London Great Ormond Street Institute of Child Health, London, United Kingdom, Laboratorio de Bioingeniería de Tejidos, Departamento de Estudios de Posgrado e Investigación, Universidad Nacional Autónoma de México, Mexico City, Mexico, Laboratorio de Inmunoquímica I, Departamento de Inmunología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico

Vitoria M. Olyntho

Roles Data curation, Validation

Affiliation Department of Medicine, McMaster Immunology Research Centre, Schroeder Allergy and Immunology Research Institute, Faculty of Health Sciences, McMaster University, Hamilton, Canada

Annette Oxenius

Affiliation Institute of Microbiology, ETH Zurich, Zurich, Switzerland

Kartika Padhan

Roles Data curation, Validation

Affiliation Lymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Kirsten Remmert

Roles Data curation, Validation

Affiliation Surgical Oncology Program, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Nathan Richoz

Roles Data curation, Validation

Affiliation Molecular Immunity Unit, Laboratory of Molecular Biology, Cambridge Institute for Therapeutic Immunology and Infectious Diseases, University of Cambridge Department of Medicine, Cambridge, United Kingdom

Edward C. Schrom

Roles Data curation, Methodology, Software

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Wanjing Shang

Roles Data curation, Validation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Lihong Shi

Roles Data curation, Validation

Affiliation Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Rochelle M. Shih

Roles Data curation, Validation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Emily Speranza

Roles Data curation, Methodology, Validation

Affiliation Florida Research and Innovation Center, Cleveland Clinic Lerner Research Institute, Port Saint Lucie, Florida, United States of America

Salome Stierli

Roles Data curation, Validation

Affiliation Institute of Anatomy, University of Zurich, Zurich, Switzerland

Sarah A. Teichmann

Roles Project administration, Supervision

Affiliations Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, Puddicombe Way, Cambridge Biomedical Campus, Cambridge, United Kingdom, Department of Medicine, University of Cambridge, Cambridge, United Kingdom

Tibor Z. Veres

Roles Data curation, Validation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Megan Vierhout

Roles Data curation, Validation

Affiliation Department of Medicine, McMaster Immunology Research Centre, Schroeder Allergy and Immunology Research Institute, Faculty of Health Sciences, McMaster University, Hamilton, Canada

Brianna T. Wachter

Roles Data curation, Validation

Affiliation Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Adam K. Wade-Vallance

Roles Data curation, Validation

Affiliation Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Margaret Williams

Roles Data curation, Validation

Affiliation Critical Care Medicine and Pulmonary Branch, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland, United States of America

Nathan Zangger

Roles Data curation, Validation

Affiliation Institute of Microbiology, ETH Zurich, Zurich, Switzerland

Ronald N. Germain

Roles Funding acquisition, Project administration, Supervision

andrea.radtke@leica-microsystems.com (AJR); rgermain@niaid.nih.gov (RNG); zivyaniv@nih.gov (ZY)

Affiliations Lymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America, Lymphocyte Biology Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Ziv Yaniv

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – review & editing

andrea.radtke@leica-microsystems.com (AJR); rgermain@niaid.nih.gov (RNG); zivyaniv@nih.gov (ZY)

Affiliation Bioinformatics and Computational Bioscience Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

Competing Interests

I have read the journal's policy and the authors of this manuscript have the following competing interests: SAT is a remunerated Scientific Advisory Board member of Qiagen, Foresite Labs, OMass Therapeutics, and a consultant and equity holder of TransitionBio and EnsoCell, and a non-executive board director of 10x Genomics, as well as part-time employee of GlaxoSmithKline. JC is an employee and stakeholder of BioLegend (revvity inc.). AJR is now an employee of Leica Microsystems. All other authors declare no competing interests.